BtaEX6009323 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019137 | SCN7A
Description
sodium channel, voltage gated, type VII alpha subunit [Source:HGNC Symbol;Acc:HGNC:10594]
Coordinates
chr2:29987937-29990606:+
Coord C1 exon
chr2:29987937-29988074
Coord A exon
chr2:29989918-29990022
Coord C2 exon
chr2:29990336-29990606
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTTCATTGCTTTACCAG
3' ss Score
-0.24
5' ss Seq
GAAGTAAGG
5' ss Score
6.38
Exon sequences
Seq C1 exon
GTAGATATGCAACCTAATTTTGAAAACAACATCTATATGTATTGTTACTTTATTGACTTTATTATCATTGGATTATTTCTTCCTCTGAGTATGTTGATTGGTGCTATTGTTGCCAATTTCCACAAGCATAAAATAAAG
Seq A exon
CAGGGAGGCTCAAATATCTTTATAACAGTGAAACAGAAGAAACAGTATCGTGCACTGAAGAAGCTGATGTATGAAGACTCTCAACAACCAGTACCTCTCCCAGAA
Seq C2 exon
AACAAGTTCCAACGATTCATCTTTGACTTGGTAACAAGTCGAGTTTTTAATATCATCATTATGACTCTTATATGTTTCCAAGCAATAACCATTATGATACAAAGTGATGAACAGAGCCCAAAAATCAACACTGCTCTGTTTTGGATTAACTCAGTTTATGTTATGCTATATATTGGAGAATGTGTACTAAAGCTCATCGTTTTCCATTGTAACTATTTCACCAGTGGATGGAACATTTTTGACTTCATGGTGGTTGTTTTCTCTATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019137-'26-28,'26-27,27-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(15.7=76.1)
A:
NO
C2:
PF0052026=Ion_trans=PU(20.2=47.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGCCAATTTCCACAAGCA
R:
AGTTACAATGGAAAACGATGAGCT
Band lengths:
245-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]