MmuEX6101802 @ mm10
Exon Skipping
Gene
ENSMUSG00000034810 | Scn7a
Description
sodium channel, voltage-gated, type VII, alpha [Source:MGI Symbol;Acc:MGI:102965]
Coordinates
chr2:66680075-66682842:-
Coord C1 exon
chr2:66682705-66682842
Coord A exon
chr2:66680864-66680968
Coord C2 exon
chr2:66680075-66680345
Length
105 bp
Sequences
Splice sites
3' ss Seq
TGTTTATTTATTTTTTTTACCAG
3' ss Score
-0.88
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
Exon sequences
Seq C1 exon
GTAAACATGCAGCCCAGCTTTGAGTACAACCTCTACATGTATAGTTACTTTATCATCTTTGTTATCTTTGGATTATTTCTTCCTCTCTGTATGCTGATTGGTGTTATTATTCGCAATTTCAACAAGCAGAAAATTAAG
Seq A exon
CAGGGAGGATCAAACATCTTTATAACAGTAAAACAGAAAAAACAGTACCGGGCCCTGAAGAAGCTCTTGTATGCAGACGTCCAGAAACCAACACCCCGCCCCAGA
Seq C2 exon
AACAAATTCCAAGGCTTCCTTTTTGACCTAGTAACACACCGTGTCTTTAATGTTATCATCATACTTCTTATCTGTTTCCAAGCAACAACCATTATGATACAAAAGGATGAGCAGAGTCCACAAATGGAAACTGCCATCTTCTGGATGAACTCCATTTTTGTCATGCTGTTCACTCTGGAATGCATACTGAAGCTCACTGCCTTCCGTTGCCACTACTTCACCAGTGCATGGAATGTTCATGACTTTATGGTGGTCATTTTCTCCATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034810-'26-33,'26-31,27-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(15.7=76.1)
A:
NO
C2:
PF0052026=Ion_trans=PU(20.4=47.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCCCAGCTTTGAGTACAA
R:
TCCATTTGTGGACTCTGCTCA
Band lengths:
258-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types