RnoEX6017209 @ rn6
Exon Skipping
Gene
ENSRNOG00000029342 | Scn7a
Description
sodium voltage-gated channel alpha subunit 7 [Source:RGD Symbol;Acc:61922]
Coordinates
chr3:52781479-52783358:-
Coord C1 exon
chr3:52783221-52783358
Coord A exon
chr3:52782292-52782396
Coord C2 exon
chr3:52781479-52781749
Length
105 bp
Sequences
Splice sites
3' ss Seq
ATTTATTTATTTTTTTTTACCAG
3' ss Score
-1.12
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
Exon sequences
Seq C1 exon
GTGTACATGCAGCCTAGTTTTGAGCACAGCCTCCACATGTACACTTACTTTATCATCTTTGTTGTGTTTGGATTATTTCTTCCCTTGTGTATGCTGATTGGTGTTATTATCAGGAATTTCAACAAGCAGAAAATTAAG
Seq A exon
CAGGGAGGATCAAATATCTTTATAACGGTAAAGCAGAAGAAACAGTACCGGGCACTGAAGAAGCTCTTGTATGCAGACTCTCAGAAACCAGCAGCCCGCCCTAGA
Seq C2 exon
AACAAGTTCCAAGGCTTCATTTGTGACGTAGTAACACATCGTGTCTTTAATGTCATCATCATACTTCTTATCTGTTTCCAAGCAACAACCATTATGATACAAAATGATGAGCAGAGTCCACAAATTGAAACCGCTGTCTTCTGGATGAACTCCCTTTTTACCATGCTGTTCACTCTGGAATGCATACTGAAGCTCACCGCCTTCCGCTGCCACTATTTCACCAGCGCATGGAATGTTCATGACTTTATGGTGGTCGTTTTCTCCATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029342-'34-43,'34-41,35-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(15.7=76.1)
A:
NO
C2:
PF0052026=Ion_trans=PU(20.2=47.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCACAGCCTCCACATGTAC
R:
ACAGCGGTTTCAATTTGTGGAC
Band lengths:
254-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]