BtaEX6009395 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016512 | TTC21B
Description
Bos taurus tetratricopeptide repeat domain 21B (TTC21B), mRNA. [Source:RefSeq mRNA;Acc:NM_001102108]
Coordinates
chr2:30439037-30445325:+
Coord C1 exon
chr2:30439037-30439147
Coord A exon
chr2:30442925-30443091
Coord C2 exon
chr2:30445203-30445325
Length
167 bp
Sequences
Splice sites
3' ss Seq
GAGTTTTTTCCCTCTCCCAGATA
3' ss Score
9.26
5' ss Seq
GAGGTAGCT
5' ss Score
5.82
Exon sequences
Seq C1 exon
GTAAAATTCAAGAAGCTCTTCGAGAATTTGAGGCTATTAAAAATAAACAAGATGTATCACTTTGTTCTCTAATTGCACTGATATACGCTCATAAAATGAGCCCTAATCCAG
Seq A exon
ATAGAGAAGCTATTCTCGAGTCAGATGCCAGAGTGAAAGAGCAGCGTAAAGGAGCTGGACCAAAAGTTTTGTACCAAGCAGGCTTGTTTTTGTGGCACGTTGGTCGGCATGATAAAGCGAGAGAATATATTGACCGAATGATCAAGATATCAAATGGGAGTAAAGAG
Seq C2 exon
GGACAGGTTTTGAGAGCATGGCTTGATATTACAAGAAGAAAAGAACCTTATACTAAAAAAGCATTAAGATACTTTGAAGAGGGATTGCAAGATGGGAATGATATTTTTGCTCTACTGGGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016512-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.107 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAAAATTCAAGAAGCTCTTCGAGA
R:
CTTACCCAGTAGAGCAAAAATATCAT
Band lengths:
234-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]