DreEX6038619 @ danRer10
Exon Skipping
Gene
ENSDARG00000012368 | ttc21b
Description
tetratricopeptide repeat domain 21B [Source:ZFIN;Acc:ZDB-GENE-031010-34]
Coordinates
chr9:50157076-50160039:-
Coord C1 exon
chr9:50159929-50160039
Coord A exon
chr9:50159637-50159803
Coord C2 exon
chr9:50157076-50157198
Length
167 bp
Sequences
Splice sites
3' ss Seq
TAAACCAAACTCATTGGCAGATC
3' ss Score
3.47
5' ss Seq
GAGGTCAGC
5' ss Score
5.66
Exon sequences
Seq C1 exon
ATCAAGTGCTGGACGCCATTCAGGAGCTGGAGATGCTGAAGGAGAGAAGAGACGTTTCACTTTGTGCGCTCATGGCTCTGGTTTATGCCCACAAGAAACGCCCAAACCCTG
Seq A exon
ATCGTGAAATCATACAGGATCTGGATGGACGGGTGAAGGAGGAGAGGAAAACGGCGAGTCCTAAAGCACTGTATTACGCGGGCATGCTGCTGTGGCTTCTGGGCCGCAATGACAAAGCAAGAGAGTATGTGGACAGAATGATCAAGATCTCCAGTGGCTCAAAAGAG
Seq C2 exon
GGAATTGTGCTAAAAGGCTGGATTGACCTGCGATCTAATAAAGATGCTTATGCAAAGAAGTCCGGGAAATACTTTGACGAAGCCTTGAAGGAGAAAAGTGACATTTTTGCTCTGATGGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012368-'2-4,'2-2,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.089 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0771912=TPR_2=WD(100=60.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAAGTGCTGGACGCCATTC
R:
CTTCCCCATCAGAGCAAAAATGT
Band lengths:
234-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]