RnoEX0094659 @ rn6
Exon Skipping
Gene
ENSRNOG00000005868 | Ttc21b
Description
tetratricopeptide repeat domain 21B [Source:RGD Symbol;Acc:1565122]
Coordinates
chr3:52350356-52356358:-
Coord C1 exon
chr3:52356248-52356358
Coord A exon
chr3:52352064-52352230
Coord C2 exon
chr3:52350356-52350478
Length
167 bp
Sequences
Splice sites
3' ss Seq
ATATTATTTTCCTTCCTCAGATA
3' ss Score
10.61
5' ss Seq
GAGGTGACC
5' ss Score
5.57
Exon sequences
Seq C1 exon
GTAAAGCTCAAGAAGCCCTTCGGGAGTTTGAGGCCATTAAAAATAAACAAGACGTGTCACTGTGTTCCCTGATGGCGCTGATGTATGTCCATAAAATGAGCCCCAATCCAG
Seq A exon
ATAGAGAAGCTATCCTGGAATTAGATACCAAAATGAAGGAGCAACGTAAGGAAGCCGGACGCAAAGCCTTGTACCATGCAGGCCTGTTTCTGTGGCACATTGGTCGCCATGATAAGGCGAGAGAATATATTGACAGAATGTCAAAAATGCCACATGATAGCAATGAG
Seq C2 exon
GGACCGATTTTGAAAGCATGGCTTGATATTACAAGAGGGAAGGAACCTTATGCTAAAAAAGCCCTACGGTATTTTGAGGAGGGATTACAAGATGGAAACGATATTTTTGCTCTGCTGGGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005868_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.196 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134241=TPR_12=PU(54.3=67.9)
C2:
PF134241=TPR_12=PD(42.9=73.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAAGAAGCCCTTCGGG
R:
ACCCAGCAGAGCAAAAATATCGT
Band lengths:
226-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]