GgaEX1060941 @ galGal3
Exon Skipping
Gene
ENSGALG00000010956 | TTC21B
Description
NA
Coordinates
chr7:21132934-21134745:+
Coord C1 exon
chr7:21132934-21133044
Coord A exon
chr7:21133645-21133811
Coord C2 exon
chr7:21134623-21134745
Length
167 bp
Sequences
Splice sites
3' ss Seq
TTTGACATTTGTCTTCTCAGATC
3' ss Score
9.79
5' ss Seq
GAGGTAGCC
5' ss Score
6.17
Exon sequences
Seq C1 exon
GTGATGTCCAAGAGAGTATTCGACAACTGGAATCCATTAAGAACAAACAGGAGGTGTCACTTTGTGCAATGATGGCGCTGATCTACGCCCACAAAAAGAGCCCTAATCCAG
Seq A exon
ATCGGGATGCTATTCTAGAGTTGGATACAAAACTGAAGGAGCAACGTAAAACAGCAGGACAGCAGGCTCTTTACTTCGCTGGCTTATTTTTGTGGCATCTTGGTCGTGAAGACAAAGCCCGTGAATACGTTGATAGGGTGATCAAAGTTTCTAATGGAGATAAAGAG
Seq C2 exon
GGATTGATTCTGAAAGCATGGCTTGATCTCACTTGTGGGAAAGAAACTCATATTAAAAAAGCTTTGAAGTACTTTGATGAAGCGCTTCAGGAAGGGAATGATGTTTTTGCTCTCCTTGGTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010956-'2-5,'2-3,3-5=AN
Average complexity
A_S
Mappability confidence:
88%=100=80%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.030 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134241=TPR_12=PU(54.9=69.6)
C2:
PF134241=TPR_12=PD(42.3=73.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATGTCCAAGAGAGTATTCGACA
R:
TTTACCAAGGAGAGCAAAAACATCA
Band lengths:
234-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]