BtaEX6009429 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007650 | SLC38A11
Description
Bos taurus solute carrier family 38, member 11 (SLC38A11), mRNA. [Source:RefSeq mRNA;Acc:NM_001031760]
Coordinates
chr2:31406144-31427706:+
Coord C1 exon
chr2:31406144-31406223
Coord A exon
chr2:31426808-31426878
Coord C2 exon
chr2:31427545-31427706
Length
71 bp
Sequences
Splice sites
3' ss Seq
ATTAACCGATTCTCTTCTAGACC
3' ss Score
8.74
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
ATCTCTCTTATTTCTACAGTTTTAACAACTCTGATTCTTGGAATTGTAGTGGCAAGGGGAGTTTCACTGGGCCCACACAT
Seq A exon
ACCAAAAACAGAAGATGCTTGGATATTTGCAAAGCCCAACGCCGTTCAGGCTGTTGGTGTGATGTCATTTG
Seq C2 exon
CATTTATTTGCCACCATAACTGCTTCTTAGTTTATGGTTCTTTGGAAGAACCTACAGTAGCTAAGTGGTCTCACATCATCCATGTGTCTACCTTGATTTCTGTATTTATCAGTATTCTCTTTGCTACGTGTGGATACTTGACATTTACTGGCTACACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007650-'11-14,'11-13,12-14=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149013=Aa_trans=FE(6.7=100)
A:
PF0149013=Aa_trans=FE(6.2=100)
C2:
PF0149013=Aa_trans=FE(13.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCAAGGGGAGTTTCACTG
R:
TGTCAAGTATCCACACGTAGCA
Band lengths:
175-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]