MmuEX6101676 @ mm10
Exon Skipping
Gene
ENSMUSG00000061171 | Slc38a11
Description
solute carrier family 38, member 11 [Source:MGI Symbol;Acc:MGI:2443383]
Coordinates
chr2:65334590-65350117:-
Coord C1 exon
chr2:65350038-65350117
Coord A exon
chr2:65335732-65335802
Coord C2 exon
chr2:65334590-65334751
Length
71 bp
Sequences
Splice sites
3' ss Seq
AATAACTGAATTTCTTCTAGACC
3' ss Score
6.85
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
ATCTCTTTCATCTCTACAATTTTAACAACTGTAATTCTTGGAATCGTAATGACAAGGGCCATTTCCTTGGGACCAAACAT
Seq A exon
ACCAAAGACAGACAATGCTTGGGTGTTTGCAAAGCCCAATGCCATCCAGGCTATTGGGGTGATGTCTTTTG
Seq C2 exon
CGTTCATTTGCCACCATAACTGCTTCCTAGTCTATGGTTCTCTCGAAGAGCCCACAGTAGCGAAGTGGCGCCGGATTATCCACACATCCATCTTGGTTTCTGTATTCATCTGTGTGCTCTTTGCAACGTGCGGGTACTTCACTTTTACTGGCTTCACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061171-'10-13,'10-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149013=Aa_trans=PD(14.3=92.6)
A:
PF0149013=Aa_trans=FE(6.2=100)
C2:
PF0149013=Aa_trans=FE(13.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCATTTCCTTGGGACCAAA
R:
AAGTGAAGTACCCGCACGTTG
Band lengths:
168-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types