GgaEX6042540 @ galGal4
Exon Skipping
Gene
ENSGALG00000011052 | SLC38A11
Description
solute carrier family 38, member 11 [Source:HGNC Symbol;Acc:HGNC:26836]
Coordinates
chr7:19510124-19517381:+
Coord C1 exon
chr7:19510124-19510203
Coord A exon
chr7:19516782-19516852
Coord C2 exon
chr7:19517220-19517381
Length
71 bp
Sequences
Splice sites
3' ss Seq
ACTAACAATTTCTGTTTTAGACC
3' ss Score
9.11
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTATCGCTTGTTTCTCTGCTTTTAACTGTTGTCATCCTGTTTATTGTGATGGTGAGGACAGTAACACTTGGTCCACAGGT
Seq A exon
ACCCAAATCAGAAAATGCATGGATATTTGCAAAATCAAATGCAATACAAGCTGTTGGGGTGATGTCTTTTG
Seq C2 exon
CATTCATCTGCCATCATAACAGCTTTTTAATATATGGCTCTCTGAAAGAACCCACATTAAACAACTGGTCTCGAATCACACATATGTCTGTTTTACTTGCTGTTGTTATCAGTGTACTATTTGCTGCATGTGGATACATGACTTTTACAGGATACACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011052-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149013=Aa_trans=FE(6.7=100)
A:
PF0149013=Aa_trans=FE(6.2=100)
C2:
PF0149013=Aa_trans=FE(13.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGATGGTGAGGACAGTAACAC
R:
TCCACATGCAGCAAATAGTACACT
Band lengths:
170-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]