BtaEX6009487 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008140 | FAP
Description
Bos taurus fibroblast activation protein, alpha (FAP), mRNA. [Source:RefSeq mRNA;Acc:NM_001098001]
Coordinates
chr2:34319319-34325750:+
Coord C1 exon
chr2:34319319-34319393
Coord A exon
chr2:34321861-34321913
Coord C2 exon
chr2:34325678-34325750
Length
53 bp
Sequences
Splice sites
3' ss Seq
GCCTCTTTTCTTCCTGACAGCTT
3' ss Score
11.15
5' ss Seq
CGGGTAAAA
5' ss Score
5.16
Exon sequences
Seq C1 exon
AAAAGTGTGAATGCTTCAAATTATGGTTTATCACCTGATCGGCAATTTGCATACCTAGAAAGTGATTATTCAAAG
Seq A exon
CTTTGGAGATACTCTTACACAGCAACATATCACATCTACGACCTTACAAACGG
Seq C2 exon
GGAGTTTATAAGAAGAAATGAGCTTCCTCGTCCAATTCAGTATTTATGCTGGTCGCCTGTTGGGAGTAAATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008140-'6-7,'6-5,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=PU(31.8=56.0)
A:
PF0093016=DPPIV_N=FE(38.6=100)
C2:
PF0093016=DPPIV_N=FE(6.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTGAATGCTTCAAATTATGGT
R:
TTTACTCCCAACAGGCGACCA
Band lengths:
142-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]