DreEX6097896 @ danRer10
Exon Skipping
Gene
ENSDARG00000079420 | dpp4
Description
dipeptidyl-peptidase 4 [Source:ZFIN;Acc:ZDB-GENE-081104-277]
Coordinates
chr22:11614707-11615384:-
Coord C1 exon
chr22:11615310-11615384
Coord A exon
chr22:11615168-11615220
Coord C2 exon
chr22:11614707-11614776
Length
53 bp
Sequences
Splice sites
3' ss Seq
GACGACTGTCTCTTTAACAGCTA
3' ss Score
8.07
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
GCCCGTGTGGCAGCGTTTGATTATCTGGTGTCAGCCGATCGAAAATACGTCTGCTTTCTGAGCAACTACACTAAG
Seq A exon
CTATGGAGACACACATACACTGCATCATATTCCATCTATGACCTGGAAAAAAG
Seq C2 exon
GGATTTTATAAATACAGATATCCCGCACGATGTCCAGTACTTAGCATGGTCTCCAACTGGCCACAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079420-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=PU(3.9=56.0)
A:
PF0093016=DPPIV_N=FE(4.7=100)
C2:
PF0093016=DPPIV_N=FE(6.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGTGGCAGCGTTTGATTA
R:
AGTTTGTGGCCAGTTGGAGAC
Band lengths:
142-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]