RnoEX6017064 @ rn6
Exon Skipping
Gene
ENSRNOG00000005679 | Fap
Description
fibroblast activation protein, alpha [Source:RGD Symbol;Acc:621253]
Coordinates
chr3:48512863-48518010:-
Coord C1 exon
chr3:48517936-48518010
Coord A exon
chr3:48516487-48516539
Coord C2 exon
chr3:48512863-48512935
Length
53 bp
Sequences
Splice sites
3' ss Seq
TTGCCCCTTCTTCCTAACAGCTC
3' ss Score
10.27
5' ss Seq
TGGGTAAAA
5' ss Score
3.28
Exon sequences
Seq C1 exon
AAAAGTGTGAATGCTACAGACTATGGCCTGTCACCTGATCGGCAGTTTATATATCTTGAAAGTGATTATTCAAAG
Seq A exon
CTCTGGCGATATTCATACACAGCGACATACTACATCTACGACCTTCAGAATGG
Seq C2 exon
GGAATTTGTAAGAGGATACGAGCTCCCTCGTCCAATTCAGTATCTGTGCTGGTCTCCCGTTGGGAGTAAATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005679-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=PU(3.8=56.0)
A:
PF0093016=DPPIV_N=FE(4.6=100)
C2:
PF0093016=DPPIV_N=FE(6.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGTGTGAATGCTACAGACTATGG
R:
GGAGACCAGCACAGATACTGA
Band lengths:
132-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]