MmuEX0018617 @ mm10
Exon Skipping
Gene
ENSMUSG00000000392 | Fap
Description
fibroblast activation protein [Source:MGI Symbol;Acc:MGI:109608]
Coordinates
chr2:62548570-62573523:-
Coord C1 exon
chr2:62573439-62573523
Coord A exon
chr2:62552274-62552326
Coord C2 exon
chr2:62548570-62548642
Length
53 bp
Sequences
Splice sites
3' ss Seq
TTTGCCCCTCTTCCTAACAGCTC
3' ss Score
10.54
5' ss Seq
TGGGTAAAA
5' ss Score
3.28
Exon sequences
Seq C1 exon
ACATGGCTGAAAACTGTCTTTGGAGTTACCACCCTGGCTGCGCTTGCTTTAGTGGTGATATGCATTGTCTTACGTCCCTCAAGAG
Seq A exon
CTCTGGCGATATTCATACACAGCGACATACTACATCTACGACCTTCAGAATGG
Seq C2 exon
GGAATTTGTAAGAGGATACGAGCTCCCTCGTCCAATTCAGTATCTATGCTGGTCGCCTGTTGGGAGTAAATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000392_MULTIEX2-4/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0093016=DPPIV_N=FE(32.7=100)
C2:
PF0093016=DPPIV_N=FE(6.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTTACCACCCTGGCTG
R:
TTTACTCCCAACAGGCGACCA
Band lengths:
135-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types