BtaEX6009502 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015330 | DPP4
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MU57]
Coordinates
chr2:34518631-34519771:+
Coord C1 exon
chr2:34518631-34518683
Coord A exon
chr2:34518785-34518857
Coord C2 exon
chr2:34519651-34519771
Length
73 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTATCTTTTTCCAGGCA
3' ss Score
10.77
5' ss Seq
TTGGTTAGT
5' ss Score
4.82
Exon sequences
Seq C1 exon
CAATGGAGGCATTCCTACACAGCTTCCTATGACATTTATGACTTAAATAAAAG
Seq A exon
GCAGTTAATTACAGAAGAGAGAATCCCAAACAACACACAGTGGATCACATGGTCATCAGTGGGTCATAAATTG
Seq C2 exon
GCATACGTTTGGAACAATGATATTTATGTGAAAAATGAACCAAATTCTCCAAGTCAGAGGATCACATGGACTGGGAAAAAAGATGTAATCTATAATGGAATAACTGACTGGGTTTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015330-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(10.4=100)
A:
PF0093016=DPPIV_N=FE(14.6=100)
C2:
PF0093016=DPPIV_N=FE(24.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGCATTCCTACACAGCT
R:
TCATAAACCCAGTCAGTTATTCCA
Band lengths:
169-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]