RnoEX6017052 @ rn6
Exon Skipping
Gene
ENSRNOG00000030763 | Dpp4
Description
dipeptidylpeptidase 4 [Source:RGD Symbol;Acc:2515]
Coordinates
chr3:48339157-48340257:-
Coord C1 exon
chr3:48340205-48340257
Coord A exon
chr3:48340025-48340097
Coord C2 exon
chr3:48339157-48339277
Length
73 bp
Sequences
Splice sites
3' ss Seq
TCCTCTTATCTTTTCTATAGACA
3' ss Score
9.31
5' ss Seq
TTGGTTAGT
5' ss Score
4.82
Exon sequences
Seq C1 exon
CAATGGAGACACTCCTACACGGCTTCATACAGTATTTATGACTTGAATAAAAG
Seq A exon
ACAGCTGATCACAGAAGAGAAGATTCCAAATAATACACAGTGGATCACATGGTCACAAGAAGGTCACAAATTG
Seq C2 exon
GCATATGTCTGGAAGAATGATATTTATGTTAAAATTGAACCACATTTGCCTAGTCATAGGATCACATCAACAGGAAAAGAAAATGTAATATTTAACGGAATAAATGACTGGGTTTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030763-'9-9,'9-7,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(4.5=100)
A:
PF0093016=DPPIV_N=FE(6.4=100)
C2:
PF0093016=DPPIV_N=FE(10.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACACTCCTACACGGCTT
R:
TCATAAACCCAGTCATTTATTCCGT
Band lengths:
168-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]