DreEX0032072 @ danRer10
Exon Skipping
Gene
ENSDARG00000078468 | fap
Description
fibroblast activation protein, alpha [Source:ZFIN;Acc:ZDB-GENE-081104-439]
Coordinates
chr9:51699860-51705934:+
Coord C1 exon
chr9:51699860-51699912
Coord A exon
chr9:51701651-51701723
Coord C2 exon
chr9:51705814-51705934
Length
73 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTCTGTTGGATTCAGGGA
3' ss Score
8.91
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CAATGGCGACACTCATTCACCGCCTCCTACAGCATTTACAATGTGGAGTCTGG
Seq A exon
GGAATTTCTCTCTAAGGTTCAGATTCCACATGTGACACAGCTTTTAACCTGGGCACCAGTAGGAAATAAACTG
Seq C2 exon
GCTTACGTATGGAATTTTAATATTTACCTCAAAGCAAGCGCCACTGCCGAGGCCGTGCAAGTCACACATAATGGAAAAGGCAATGAAATTCTCAATGGAGTCCCAGACTGGGTTTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078468-'5-6,'5-5,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(4.7=100)
A:
PF0093016=DPPIV_N=FE(6.6=100)
C2:
PF0093016=DPPIV_N=FE(11.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCGACACTCATTCACCG
R:
CCAGTCTGGGACTCCATTGAGA
Band lengths:
161-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]