HsaEX6016270 @ hg19
Exon Skipping
Gene
ENSG00000078098 | FAP
Description
fibroblast activation protein, alpha [Source:HGNC Symbol;Acc:3590]
Coordinates
chr2:163075573-163080170:-
Coord C1 exon
chr2:163080118-163080170
Coord A exon
chr2:163076363-163076435
Coord C2 exon
chr2:163075573-163075693
Length
73 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTTCTTTCCTTCTAGAGA
3' ss Score
12.07
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
Exon sequences
Seq C1 exon
CTTTGGAGATACTCTTACACAGCAACATATTACATCTATGACCTTAGCAATGG
Seq A exon
AGAATTTGTAAGAGGAAATGAGCTTCCTCGTCCAATTCAGTATTTATGCTGGTCGCCTGTTGGGAGTAAATTA
Seq C2 exon
GCATATGTCTATCAAAACAATATCTATTTGAAACAAAGACCAGGAGATCCACCTTTTCAAATAACATTTAATGGAAGAGAAAATAAAATATTTAATGGAATCCCAGACTGGGTTTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078098-'11-16,'11-15,14-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(47.2=100)
A:
PF0093016=DPPIV_N=FE(33.8=100)
C2:
PF0093016=DPPIV_N=FE(10.9=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGATACTCTTACACAGCAACA
R:
CCAGTCTGGGATTCCATTAAATATTT
Band lengths:
161-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)