RnoEX0034891 @ rn6
Exon Skipping
Gene
ENSRNOG00000005679 | Fap
Description
fibroblast activation protein, alpha [Source:RGD Symbol;Acc:621253]
Coordinates
chr3:48512022-48516539:-
Coord C1 exon
chr3:48516487-48516539
Coord A exon
chr3:48512863-48512935
Coord C2 exon
chr3:48512022-48512142
Length
73 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTTCTTTCTTTCTAGGGA
3' ss Score
13.79
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
Exon sequences
Seq C1 exon
CTCTGGCGATATTCATACACAGCGACATACTACATCTACGACCTTCAGAATGG
Seq A exon
GGAATTTGTAAGAGGATACGAGCTCCCTCGTCCAATTCAGTATCTGTGCTGGTCTCCCGTTGGGAGTAAATTA
Seq C2 exon
GCATATGTCTATCAAAACAATATTTATTTAAAACAAAGACCAGGAGATCCACCTTTTCAAATAACTTACACTGGAAGAGAAAATAGAATATTTAATGGAATTCCAGACTGGGTTTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005679-'6-7,'6-6,8-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(4.6=100)
A:
PF0093016=DPPIV_N=FE(6.5=100)
C2:
PF0093016=DPPIV_N=FE(10.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGCGATATTCATACACAGCG
R:
AAACCCAGTCTGGAATTCCAT
Band lengths:
167-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]