MmuEX6101616 @ mm10
Exon Skipping
Gene
ENSMUSG00000000392 | Fap
Description
fibroblast activation protein [Source:MGI Symbol;Acc:MGI:109608]
Coordinates
chr2:62547755-62552326:-
Coord C1 exon
chr2:62552274-62552326
Coord A exon
chr2:62548570-62548642
Coord C2 exon
chr2:62547755-62547875
Length
73 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTCTTTCTTTCTAGGGA
3' ss Score
13.64
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
Exon sequences
Seq C1 exon
CTCTGGCGATATTCATACACAGCGACATACTACATCTACGACCTTCAGAATGG
Seq A exon
GGAATTTGTAAGAGGATACGAGCTCCCTCGTCCAATTCAGTATCTATGCTGGTCGCCTGTTGGGAGTAAATTA
Seq C2 exon
GCATATGTATATCAAAACAATATTTATTTGAAACAAAGACCAGGAGATCCACCTTTTCAAATAACTTATACTGGAAGAGAAAATAGAATATTTAATGGAATACCAGACTGGGTTTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000392-'9-11,'9-9,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(32.7=100)
A:
PF0093016=DPPIV_N=FE(6.5=100)
C2:
PF0093016=DPPIV_N=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGCGATATTCATACACAGCG
R:
AAACCCAGTCTGGTATTCCATT
Band lengths:
167-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types