DreEX6097897 @ danRer10
Exon Skipping
Gene
ENSDARG00000079420 | dpp4
Description
dipeptidyl-peptidase 4 [Source:ZFIN;Acc:ZDB-GENE-081104-277]
Coordinates
chr22:11613710-11615220:-
Coord C1 exon
chr22:11615168-11615220
Coord A exon
chr22:11614707-11614776
Coord C2 exon
chr22:11613710-11613830
Length
70 bp
Sequences
Splice sites
3' ss Seq
TCTAACTTGCTTTATTTCAGGGA
3' ss Score
9.2
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CTATGGAGACACACATACACTGCATCATATTCCATCTATGACCTGGAAAAAAG
Seq A exon
GGATTTTATAAATACAGATATCCCGCACGATGTCCAGTACTTAGCATGGTCTCCAACTGGCCACAAACTG
Seq C2 exon
GCATTTGTGTGGAAATACAATGTTTATGTGAAGGAAACGCCCAACTCTGCGTTCAAGCAGGTCACTACAAACGGAGCTCATAACCTGATCCTTAATGGCGTTCCTGACTGGGTGTATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079420-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(4.7=100)
A:
PF0093016=DPPIV_N=FE(6.4=100)
C2:
PF0093016=DPPIV_N=FE(11.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGACACACATACACTGCA
R:
CATACACCCAGTCAGGAACGC
Band lengths:
168-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]