HsaEX6016270 @ hg38
Exon Skipping
Gene
ENSG00000078098 | FAP
Description
fibroblast activation protein alpha [Source:HGNC Symbol;Acc:HGNC:3590]
Coordinates
chr2:162219063-162223660:-
Coord C1 exon
chr2:162223608-162223660
Coord A exon
chr2:162219853-162219925
Coord C2 exon
chr2:162219063-162219183
Length
73 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTTCTTTCCTTCTAGAGA
3' ss Score
12.07
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
Exon sequences
Seq C1 exon
CTTTGGAGATACTCTTACACAGCAACATATTACATCTATGACCTTAGCAATGG
Seq A exon
AGAATTTGTAAGAGGAAATGAGCTTCCTCGTCCAATTCAGTATTTATGCTGGTCGCCTGTTGGGAGTAAATTA
Seq C2 exon
GCATATGTCTATCAAAACAATATCTATTTGAAACAAAGACCAGGAGATCCACCTTTTCAAATAACATTTAATGGAAGAGAAAATAAAATATTTAATGGAATCCCAGACTGGGTTTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078098-'15-23,'15-22,18-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(11.0=100)
A:
PF0093016=DPPIV_N=FE(15.6=100)
C2:
PF0093016=DPPIV_N=FE(10.9=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGATACTCTTACACAGCAACA
R:
CCAGTCTGGGATTCCATTAAATATTT
Band lengths:
161-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains