GgaEX0016627 @ galGal4
Exon Skipping
Gene
ENSGALG00000011099 | FAP
Description
seprase [Source:RefSeq peptide;Acc:NP_001180568]
Coordinates
chr7:20585954-20588000:+
Coord C1 exon
chr7:20585954-20586006
Coord A exon
chr7:20587147-20587219
Coord C2 exon
chr7:20587880-20588000
Length
73 bp
Sequences
Splice sites
3' ss Seq
AACCTCTTTCCTTTTTTTAGTGG
3' ss Score
8.01
5' ss Seq
TTGGTCAGT
5' ss Score
5.07
Exon sequences
Seq C1 exon
CTGTGGAGATATTCTTATACTGCATCATACCACATTTATGATCTCATATATGG
Seq A exon
TGGTTTTGTAACAGAAAATCAGCTTCCACATAAAATTCAGTATATATCCTGGTCACCCGTTGGACACAAATTG
Seq C2 exon
GCGTATGTTTACCAAAATAATATCTATTTGAAACAAAGTCCAAGAGAGGCACCAATTAAACTAACTAGTGATGGAAAAGAAAATGAAATATTTAATGGGATACCAGATTGGGTCTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011099_MULTIEX3-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(4.6=100)
A:
PF0093016=DPPIV_N=FE(6.5=100)
C2:
PF0093016=DPPIV_N=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGAGATATTCTTATACTGCATCA
R:
AGACCCAATCTGGTATCCCAT
Band lengths:
167-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]