MmuEX6101596 @ mm10
Exon Skipping
Gene
ENSMUSG00000035000 | Dpp4
Description
dipeptidylpeptidase 4 [Source:MGI Symbol;Acc:MGI:94919]
Coordinates
chr2:62374366-62379329:-
Coord C1 exon
chr2:62379277-62379329
Coord A exon
chr2:62379097-62379169
Coord C2 exon
chr2:62374366-62374526
Length
73 bp
Sequences
Splice sites
3' ss Seq
TCCTCTTATATTTTCTATAGACA
3' ss Score
8.16
5' ss Seq
TTGGTTAGT
5' ss Score
4.82
Exon sequences
Seq C1 exon
CAATGGAGACATTCCTACACAGCTTCATACAACATTTATGATGTGAATAAAAG
Seq A exon
ACAGCTGATCACAGAAGAGAAGATTCCAAATAATACACAGTGGATCACATGGTCACCAGAAGGTCATAAGTTG
Seq C2 exon
AGGAAGTCTTCGGTGCCTACTCTGCACTGTGGTGGTCTCCAAACAACACGTTTCTAGCTTATGCCCAGTTTAACGACACAGGAGTGCCGCTCATTGAATACTCCTTCTATTCTGATGAGTCACTGCAGTACCCCAAGACAGTGTGGATTCCATACCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035000_MULTIEX1-2/3=1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(4.6=100)
A:
PF0093016=DPPIV_N=FE(6.5=100)
C2:
PF0093016=DPPIV_N=FE(14.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACATTCCTACACAGCTTCA
R:
GGGGTACTGCAGTGACTCATC
Band lengths:
183-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types