BtaEX6009571 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032515 | PLA2R1
Description
Bos taurus phospholipase A2 receptor 1, 180kDa (PLA2R1), mRNA. [Source:RefSeq mRNA;Acc:NM_175051]
Coordinates
chr2:36492471-36498723:+
Coord C1 exon
chr2:36492471-36492615
Coord A exon
chr2:36495884-36496122
Coord C2 exon
chr2:36498555-36498723
Length
239 bp
Sequences
Splice sites
3' ss Seq
TGTTTCTGTTCTTGTTCTAGATG
3' ss Score
11.68
5' ss Seq
GATGTAGGT
5' ss Score
4.9
Exon sequences
Seq C1 exon
ATTCCAAATCACAACACCACTGAAGTTCAAAAACGCATTCCTCTCTGTGGCTTGCTGTCAAATAATCCTAATTTTCATTTCACTGGAAAATGGTATTTTGAAGACTGTAGAGAAGGTTATGGGTTTGTTTGTGAAAAAATGCAGG
Seq A exon
ATGCTTCTGGACACAGTATAAATACATCTGATATGTATCCAATCCCTAATACCTTAGAATATGGAAACAGAACTTACAAAATAATTAATGCAAATATGACTTGGTATACAGCACTAAAAACCTGCCTGATGCATGGAGCAGAACTGGCCAGCATTACAGACCAGTACCACCAGTCTTTCCTCACTGTTATCCTTAACCGGGTGGGATATGCCCACTGGATTGGACTGTTCACTGAAGAT
Seq C2 exon
AATGGTCTTAGTTTTGACTGGTCAGATGGCACCAAATCCTCCTTCACTTTTTGGAAAGATGATGAATCATCCTTCCTTGGTGACTGTGTTTTTGCTGACACCAGTGGACGCTGGAGTAGCACAGCCTGCGAGTCGTATCTGCAAGGAGCCATTTGTCAAGTGCCCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032515-'26-33,'26-32,28-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(38.1=91.8)
A:
PF0005916=Lectin_C=PU(47.1=61.2)
C2:
PF0005916=Lectin_C=PD(51.0=93.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCACTGAAGTTCAAAAACGC
R:
GGCACTTGACAAATGGCTCCT
Band lengths:
296-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]