DreEX0006874 @ danRer10
Exon Skipping
Gene
ENSDARG00000077474 | PLA2R1
Description
phospholipase A2 receptor 1, 180kDa [Source:HGNC Symbol;Acc:HGNC:9042]
Coordinates
chr11:11103923-11108484:+
Coord C1 exon
chr11:11103923-11104058
Coord A exon
chr11:11106784-11107022
Coord C2 exon
chr11:11108298-11108484
Length
239 bp
Sequences
Splice sites
3' ss Seq
CATTATCTTCATTATTTCAGACA
3' ss Score
7.11
5' ss Seq
GACGTAAGG
5' ss Score
7.23
Exon sequences
Seq C1 exon
AGGATTAATTATAGATCTCCTGAAGTACCTCATTGCACTTTCCTGTCCAACAGCCACAACTTCCGCTTGACAGGGATTTGGCAAGATGACGTCTGTACTGAAAAGATATATGGCTTTGTCTGCGAGAAAGCGCAAG
Seq A exon
ACACCACCAAGCGTCCCACTCACTCCTATCACACTGCATCCTCTCTGGGCACATCTGAGTTCAGGAACCACACTTATCTGGTCGCCCATGGCAACATGAGCTGGTACGAGGCCCAGGAAAGGTGTTTGGTGAAGGGGGCAACACTCGTGAGCATCACAGACCCATTTCAGCAAGCTTATCTGACCTTTCTGATCAACAGACTGGACGCCCCGCATTGGATCGGCTTATACAGCACAGAC
Seq C2 exon
GATGGCATATCCCACCAGTGGTCTGATGGAAGTGAGGGATGGTTTACTCATTGGGAAGATTCAAATTATTACCCTGAAGGGCCGGTGGGAGATGGAGGCTGCGTGTCTATGGATACTAATGGACGCTGGAGAGACAATGAATGTGACATGAGGTTATCAGGAGCGATATGCTACATACCCCCACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077474-'26-26,'26-25,27-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.050 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(38.5=91.3)
A:
PF0005916=Lectin_C=PU(45.0=61.2)
C2:
PF0005916=Lectin_C=PD(53.2=92.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCATTGCACTTTCCTGTCC
R:
TGGGTGGGGGTATGTAGCATA
Band lengths:
297-536
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]