MmuEX6101533 @ mm9
Exon Skipping
Gene
ENSMUSG00000054580 | Pla2r1
Description
phospholipase A2 receptor 1 [Source:MGI Symbol;Acc:MGI:102468]
Coordinates
chr2:60265684-60270158:-
Coord C1 exon
chr2:60270011-60270158
Coord A exon
chr2:60266563-60266801
Coord C2 exon
chr2:60265684-60265852
Length
239 bp
Sequences
Splice sites
3' ss Seq
TGTTGATGTTCTCGTTCCAGACA
3' ss Score
8.52
5' ss Seq
GACGTAGGT
5' ss Score
6.78
Exon sequences
Seq C1 exon
ATACCAAGTTATAACACCACTGAATTTCAAAAGCATATTCCTCTCTGTGCCCTCATGTCAAGTAATCCTAATTTCCATTTTACTGGAAAATGGTATTTCGATGACTGTGGGAAAGAAGGCTATGGATTTGTCTGTGAAAAAATGCAAG
Seq A exon
ACACCCTTGAACACCATGTAAACGTGTCTGATACGTCTGCAATCCCCAGTACGTTAGAATATGGAAACAGAACTTATAAGATAATCCGTGGTAATATGACTTGGTATGCAGCCGGAAAGTCCTGCCGGATGCACAGAGCAGAACTGGCCAGCATTCCAGATGCGTTTCACCAGGCCTTCCTCACGGTTCTCCTCAGCAGGCTGGGACACACCCACTGGATTGGACTCTCCACCACAGAC
Seq C2 exon
AATGGTCAGACTTTTGACTGGTCGGACGGCACCAAATCCCCTTTCACCTATTGGAAGGATGAGGAGTCGGCCTTTCTTGGTGACTGCGCTTTTGCTGACACCAACGGACGCTGGCATAGCACAGCCTGCGAGTCATTTCTGCAAGGCGCCATTTGTCACGTAGTCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054580-'26-26,'26-25,27-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(38.7=92.0)
A:
PF0005916=Lectin_C=PU(47.1=61.2)
C2:
PF0005916=Lectin_C=PD(51.0=93.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCACTGAATTTCAAAAGCA
R:
TGACTACGTGACAAATGGCGC
Band lengths:
301-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: