GgaEX0016717 @ galGal3
Exon Skipping
Gene
ENSGALG00000011149 | PLA2R1
Description
NA
Coordinates
chr7:23445963-23447816:+
Coord C1 exon
chr7:23445963-23446107
Coord A exon
chr7:23446890-23447128
Coord C2 exon
chr7:23447648-23447816
Length
239 bp
Sequences
Splice sites
3' ss Seq
ATTCTCTCTGTTTCCAACAGACA
3' ss Score
10.04
5' ss Seq
GATGTGCGT
5' ss Score
4.37
Exon sequences
Seq C1 exon
AGACCACGTTATAATGGTGTCTATGTTGAAGAACAAGTTCCACTTTGTACACTGGTATCAAATAACCCTAACTTTTATTTTACGGGAAAATGGTACTTAGAAAACTGTGAGAAAAATTATGGGTTTGTCTGCCAAAAAGGGCAGG
Seq A exon
ACACATCCAGGCATATTGTCAATGCATCTGAAATGTACCCCGTGCCAGATACTTTACAGTATGCAAACAGAACATATACCCTAATACGTGGGAATTTTACATGGTCTGCAGCTTTAAAAGCCTGCATGGCAAATGGAGCTGAGCTGGTCAGCATTGCAGATCAGTACCACCAGTCTTTCCTCACGATCATTGTGAATCGGCTGGGATACAACCACTGGATCGGGCTGTTCACTGCGGAT
Seq C2 exon
AATGGGCTTAATTTTGAGTGGTCAGATGGGACTAGATCCTTGTTTACCTTCTGGGAAGATGATGAGTCCCAGGCCTTGGGCAGCTGTGTTTATATGGATACCTCTGGGCGCTGGAAGAGTACCAGCTGTGAACGACTCCTGCCCGGAGCAGTCTGCCATGTGCCACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011149-'31-34,'31-33,32-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(38.1=91.8)
A:
PF0005916=Lectin_C=PU(52.2=60.0)
C2:
PF0005916=Lectin_C=PD(51.5=93.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGTCTATGTTGAAGAACAAGT
R:
CACATGGCAGACTGCTCCG
Band lengths:
293-532
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]