BtaEX6009573 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032515 | PLA2R1
Description
Bos taurus phospholipase A2 receptor 1, 180kDa (PLA2R1), mRNA. [Source:RefSeq mRNA;Acc:NM_175051]
Coordinates
chr2:36491213-36492615:+
Coord C1 exon
chr2:36491213-36491330
Coord A exon
chr2:36492008-36492138
Coord C2 exon
chr2:36492471-36492615
Length
131 bp
Sequences
Splice sites
3' ss Seq
AATGTATTCTTATTTTTCAGCTT
3' ss Score
9.09
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
TGCCTTTTGCTGAAAATCCCTGAAGGCCCAAGTGACTGGAAGAACTGGACATCTGCTCAAGATTTTTGTGTTGAAGAAGGGGGGACACTGGTTGCCATTGAAAATGAGGTGGAACAAG
Seq A exon
CTTTCATTACCATGAATCTTTTTGGCCATACCACTAATGTGTGGATAGGGTTACAAGATGATGATTATGAAAAATGGCTAAATGGAAGGCCTGTGTCATATTCTAATTGGTCTCCATTTGATACAAAAAAT
Seq C2 exon
ATTCCAAATCACAACACCACTGAAGTTCAAAAACGCATTCCTCTCTGTGGCTTGCTGTCAAATAATCCTAATTTTCATTTCACTGGAAAATGGTATTTTGAAGACTGTAGAGAAGGTTATGGGTTTGTTTGTGAAAAAATGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032515-'24-31,'24-30,25-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(23.7=70.0)
A:
PF0005916=Lectin_C=FE(36.4=100)
C2:
PF0005916=Lectin_C=PD(38.1=91.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGAAAATCCCTGAAGGCC
R:
TCACAAACAAACCCATAACCTTCTCT
Band lengths:
245-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]