RnoEX0066608 @ rn6
Exon Skipping
Gene
ENSRNOG00000008129 | Pla2r1
Description
phospholipase A2 receptor 1 [Source:RGD Symbol;Acc:1309777]
Coordinates
chr3:46501325-46502787:-
Coord C1 exon
chr3:46502670-46502787
Coord A exon
chr3:46501910-46502040
Coord C2 exon
chr3:46501325-46501472
Length
131 bp
Sequences
Splice sites
3' ss Seq
AATGTATTTCTCTCCTCCAGCTT
3' ss Score
9.28
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
TGCTTCCTGGTGACAATCCCCAAGGACCCACGGGAGCTGAAGACCTGGACAGGTGCTCAGGAATTCTGTGCTGCCAAGGGTGGGACGCTGGTCTCCATCGAAAGTGAACTGGAACAAG
Seq A exon
CTTTCATTACTGTGAATCTTTTCGGCCAGACCACGAATGTATGGATAGGGTTACAAAGTGACAATCATGAGAATTGGGTAAATGGGAAGCCTGTGGTGTATTCTAACTGGTCTCCATCTGATGTAATAAAT
Seq C2 exon
ATCCCCAATTATAACACCACTGAAGTTCAAAAGCGTGCTCCACTCTGTGCCCTGATGTCAAGTAATCCTAATTTCCATTTTACTGGAAAATGGTATTTCGATGACTGTGGGAAAAAAGGCTATGGATTTGTGTGTGAAAAAATGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008129-'25-29,'25-28,26-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(23.5=70.0)
A:
PF0005916=Lectin_C=FE(36.1=100)
C2:
PF0005916=Lectin_C=PD(38.7=92.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGACAATCCCCAAGGAC
R:
TCACACACAAATCCATAGCCT
Band lengths:
249-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]