DreEX0006873 @ danRer10
Exon Skipping
Gene
ENSDARG00000077474 | PLA2R1
Description
phospholipase A2 receptor 1, 180kDa [Source:HGNC Symbol;Acc:HGNC:9042]
Coordinates
chr11:11099955-11104058:+
Coord C1 exon
chr11:11099955-11100072
Coord A exon
chr11:11100155-11100267
Coord C2 exon
chr11:11103923-11104058
Length
113 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTTTTTGGTTGAAGCCT
3' ss Score
5.69
5' ss Seq
GAGGTATAA
5' ss Score
5.96
Exon sequences
Seq C1 exon
TGTCTGTATGTGTATCTCCCGGACCGTCCAGAAAAGGGGAAGAGCTGGCAGGAGGCTCAGGCTGTGTGCTCGGCCAATCAGGGCTCTCTGGTGTCCATCAAGGATGAGATCGAACAAG
Seq A exon
CCTATATCGTCATGATGCTTCATGGCTCGTCAGCGGGGGTTTGGATCGGTGTGCAAGGACGTTTTTCTTCCAAATGGAGCAACAAGAAGCCGATCGTCTACAGTAACTGGGAG
Seq C2 exon
AGGATTAATTATAGATCTCCTGAAGTACCTCATTGCACTTTCCTGTCCAACAGCCACAACTTCCGCTTGACAGGGATTTGGCAAGATGACGTCTGTACTGAAAAGATATATGGCTTTGTCTGCGAGAAAGCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077474-'24-23,'24-22,25-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(25.7=70.0)
A:
PF0005916=Lectin_C=FE(33.9=100)
C2:
PF0005916=Lectin_C=PD(38.5=91.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGTATCTCCCGGACCGTC
R:
GCTTTCTCGCAGACAAAGCCA
Band lengths:
242-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]