GgaEX6042617 @ galGal3
Exon Skipping
Gene
ENSGALG00000011149 | PLA2R1
Description
NA
Coordinates
chr7:23444427-23446107:+
Coord C1 exon
chr7:23444427-23444544
Coord A exon
chr7:23445272-23445402
Coord C2 exon
chr7:23445963-23446107
Length
131 bp
Sequences
Splice sites
3' ss Seq
ACTTCTGTTTCATTTTCCAGCTT
3' ss Score
10.09
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
TGCTTTTTGATACAAATTCCAAAGGATCCAGAGCACCTGAGGAGCTGGTATTCTGCACAGACATTCTGCAGTAGATACGACGGGTCCCTCGCTTCCCTTGAAGATGAACTGGAACAAG
Seq A exon
CTTTCATAACAATGAATCTATTTGGTCGCAAAACTAGTGTTTGGATAGCTTTCCAGGGTGATGATTATGAAAAATGGATGAATGAAAATCCTCCAAGATATTCCAACTGGTCTCCAATTGAAGCAGTGCAT
Seq C2 exon
AGACCACGTTATAATGGTGTCTATGTTGAAGAACAAGTTCCACTTTGTACACTGGTATCAAATAACCCTAACTTTTATTTTACGGGAAAATGGTACTTAGAAAACTGTGAGAAAAATTATGGGTTTGTCTGCCAAAAAGGGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011149-'25-31,'25-28,27-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(24.6=70.0)
A:
PF0005916=Lectin_C=FE(36.4=100)
C2:
PF0005916=Lectin_C=PD(38.1=91.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAATTCCAAAGGATCCAGAGCA
R:
TTGGCAGACAAACCCATAATTTT
Band lengths:
242-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]