BtaEX6009580 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032515 | PLA2R1
Description
Bos taurus phospholipase A2 receptor 1, 180kDa (PLA2R1), mRNA. [Source:RefSeq mRNA;Acc:NM_175051]
Coordinates
chr2:36462097-36470058:+
Coord C1 exon
chr2:36462097-36462242
Coord A exon
chr2:36467077-36467161
Coord C2 exon
chr2:36469926-36470058
Length
85 bp
Sequences
Splice sites
3' ss Seq
TTAGTTTCTTCTCTTCACAGGAC
3' ss Score
10.26
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GTATTTCATAGTGAAAAAGTCCTGATGAAAAGAACATGGAGACAAGCTGAAGAATTTTGTGAAGAATTTGGAGCTCATCTTGCAAGCTTTGCCCATATTGAGGAAGAGAATTTTGTGAATGAGCTTTTACATTCAAAATTTAATCG
Seq A exon
GACAGAAGAAAGGCAGTTCTGGATTGGATTTAATAAAAGAAACCCACTGAATGCTGGTTCTTGGGAATGGTCTGATGGAACTCCT
Seq C2 exon
GTTGTCTCTTCATTTTTAGACAATTCTTATTTTGGAGAAGATGCAAGAAATTGTGCTGTTTATAAGGCAAATAAAACGTTGCTACCCTCATACTGTGGTTCCAAACGTGAATGGATATGCAAAATTCCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032515-'14-19,'14-18,16-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(36.0=81.6)
A:
PF0005916=Lectin_C=FE(25.2=100)
C2:
PF0005916=Lectin_C=PD(36.9=91.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGCTCATCTTGCAAGCTT
R:
CCACAGTATGAGGGTAGCAACG
Band lengths:
176-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]