GgaEX6042622 @ galGal3
Exon Skipping
Gene
ENSGALG00000011149 | PLA2R1
Description
NA
Coordinates
chr7:23437624-23439286:+
Coord C1 exon
chr7:23437624-23437769
Coord A exon
chr7:23438272-23438356
Coord C2 exon
chr7:23439154-23439286
Length
85 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTGTTTCCATCACAGGAC
3' ss Score
11.27
5' ss Seq
CCTGTAAAT
5' ss Score
-0.64
Exon sequences
Seq C1 exon
ATATTTCACAGAGAGAAAATTCTGATGAAAAGAACGTGGAGTGAAGCAGAAACATTATGCCAAGATTTCGGAGCACATCTTGCCAGTTTTTCCCATGTCTATGAAGAGACTTTTTTAAACAATTTATTATATACAATTTTTGATAG
Seq A exon
GACAGAAGAAAGACAGTTCTGGATTGGATTTAATAGAAGAAACCCATTTTCTGGAGGGACGTGGCAGTGGTCTGACAGAACACCT
Seq C2 exon
GTTGTAGCTTCATTTCTGGAGAGCAAGTATGTTGAAGATGACTCAAGAAACTGTGGTGTATTCAAAGTAAATAGAACAATTTTTCCAGCACACTGCAATGAAAAGCGTGAATGGATATGCAAAATACCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011149-'13-16,'13-15,14-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(36.0=81.6)
A:
PF0005916=Lectin_C=FE(25.2=100)
C2:
PF0005916=Lectin_C=PD(36.9=73.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACATCTTGCCAGTTTTTCCC
R:
ACGCTTTTCATTGCAGTGTGC
Band lengths:
182-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]