HsaEX6016181 @ hg38
Exon Skipping
Gene
ENSG00000153246 | PLA2R1
Description
phospholipase A2 receptor 1 [Source:HGNC Symbol;Acc:HGNC:9042]
Coordinates
chr2:159977284-159984073:-
Coord C1 exon
chr2:159983928-159984073
Coord A exon
chr2:159979830-159979914
Coord C2 exon
chr2:159977284-159977416
Length
85 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTCTTCTCTTTACAGGAC
3' ss Score
12.89
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GTATTTCATAGTGAAAAAGTTCTGATGAAAAGAACATGGAGAGAAGCTGAAGCATTTTGCGAAGAATTTGGAGCTCATCTTGCAAGCTTTGCCCATATTGAGGAAGAGAATTTTGTGAATGAGCTCTTACATTCAAAATTTAATTG
Seq A exon
GACAGAAGAAAGGCAGTTCTGGATTGGATTTAATAAAAGAAACCCACTGAATGCCGGCTCATGGGAGTGGTCTGATAGAACTCCT
Seq C2 exon
GTTGTCTCTTCGTTTTTAGACAACACTTATTTTGGAGAAGATGCAAGAAACTGTGCTGTTTATAAGGCAAACAAAACATTGCTGCCCTTACACTGTGGTTCCAAACGTGAATGGATATGCAAAATCCCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153246-'29-31,'29-30,32-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(36.0=81.6)
A:
PF0005916=Lectin_C=FE(25.2=100)
C2:
PF0005916=Lectin_C=PD(36.9=91.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGCTCATCTTGCAAGCTT
R:
CCACAGTGTAAGGGCAGCAAT
Band lengths:
176-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains