MmuEX6101526 @ mm10
Exon Skipping
Gene
ENSMUSG00000054580 | Pla2r1
Description
phospholipase A2 receptor 1 [Source:MGI Symbol;Acc:MGI:102468]
Coordinates
chr2:60448834-60455231:-
Coord C1 exon
chr2:60455086-60455231
Coord A exon
chr2:60452402-60452486
Coord C2 exon
chr2:60448834-60448966
Length
85 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTCTTCTCTTCCCAGGAC
3' ss Score
11.35
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GTGTTTCATAGCGAAAAGGTCCTGATGAAAAGATCGTGGAGAGAAGCAGAAGCATTCTGTGAGGAGTTTGGGGCTCACCTCGCAAGCTTTGCCCATATAGAGGAAGAAAATTTCGTGAATGAGCTTCTACATTCAAAATTTAATTG
Seq A exon
GACACAGGAAAGGCAGTTCTGGATTGGATTTAATAGAAGGAACCCACTGAATGCTGGTTCTTGGGCGTGGTCTGACGGGTCACCT
Seq C2 exon
GTTGTCTCTTCATTTTTAGACAATGCTTATTTTGAAGAAGATGCAAAAAATTGTGCTGTGTATAAGGCAAACAAAACATTGTTGCCCTCGAACTGTGCCTCCAAACACGAGTGGATATGCAGAATTCCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054580-'22-24,'22-23,23-24=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(36.0=81.6)
A:
PF0005916=Lectin_C=FE(25.2=100)
C2:
PF0005916=Lectin_C=PD(36.9=91.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGTTTGGGGCTCACCTC
R:
ACAGTTCGAGGGCAACAATGT
Band lengths:
182-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types