BtaEX6009582 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032515 | PLA2R1
Description
Bos taurus phospholipase A2 receptor 1, 180kDa (PLA2R1), mRNA. [Source:RefSeq mRNA;Acc:NM_175051]
Coordinates
chr2:36444176-36462242:+
Coord C1 exon
chr2:36444176-36444345
Coord A exon
chr2:36459865-36460067
Coord C2 exon
chr2:36462097-36462242
Length
203 bp
Sequences
Splice sites
3' ss Seq
GTGTTGTTTTCTGCTTTTAGGCT
3' ss Score
10.6
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GTTTGAACAGGCTTTTATTACCAGTTTGATCAGTAGTGTGGTAAAAACGAAGGACACTTATTTTTGGATCGCTCTTCAAGATCAAAATAATACAGGAGAATACACTTGGAAGACGGCAGGGCAGCAGTTGGAGCCAGTGAAGTACACACACTGGAACACACGTCAGCCCC
Seq A exon
GCTACAGTGGTGGCTGCGTTGTCATGCGAGGGAGGAGTCACCCTGGCCGCTGGGAAGTGAGGGACTGTAGGCACTTTAAGGCGATGTCCCTGTGCAAGCAACCAGTGGAAAATCGGGAGAAAACCAAGCAAGAAGAGGGATGGCCCTTTCACCCCTGCTATTTGGATTGGGAGTCAGAGCCTGGCCTGGCCAGTTGCTTCAAG
Seq C2 exon
GTATTTCATAGTGAAAAAGTCCTGATGAAAAGAACATGGAGACAAGCTGAAGAATTTTGTGAAGAATTTGGAGCTCATCTTGCAAGCTTTGCCCATATTGAGGAAGAGAATTTTGTGAATGAGCTTTTACATTCAAAATTTAATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032515-'11-16,'11-15,13-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.044 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(57.6=100)
A:
PF0005916=Lectin_C=PD(33.3=48.5)
C2:
PF0005916=Lectin_C=PU(36.0=81.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACAGGCTTTTATTACCAGTTTGA
R:
AGCTCATTCACAAAATTCTCTTCCT
Band lengths:
292-495
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]