GgaEX1044161 @ galGal3
Exon Skipping
Gene
ENSGALG00000011149 | PLA2R1
Description
NA
Coordinates
chr7:23436259-23437769:+
Coord C1 exon
chr7:23436259-23436428
Coord A exon
chr7:23437135-23437337
Coord C2 exon
chr7:23437624-23437769
Length
203 bp
Sequences
Splice sites
3' ss Seq
TGCTTGCTTCCATGCTTTAGGTC
3' ss Score
8.43
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GTTTGAGCAAGCTTTTATCACCAGCATGATCCGTAGTGTGGTAAAATCTGAGAGAACTTATTTTTGGATAGGACTGCAAGACCTTAACAACACAGGAGAATACGTTTGGCTAACAAAAGATGGGAAAAATCACTCTGTAAGCTACACAAACTGGAACAAGCATCAGCCAC
Seq A exon
GTCATTCTGGAGGATGTGTGGCAATGCGAGGGCAGGATCCTGTTGGTTACTGGGAGGTAAAAAGCTGTAAGAACTTCAAAGCAATGTCATTGTGCAAGCAAAAAATCAGTTCTTATGAAGAACCTGAACTTACTTTTCAAAGACATTTAAGTTCCTGCTACTTTGGGTGGGAGTCAGAAGGCAATCTACTCAACTGCTACAAG
Seq C2 exon
ATATTTCACAGAGAGAAAATTCTGATGAAAAGAACGTGGAGTGAAGCAGAAACATTATGCCAAGATTTCGGAGCACATCTTGCCAGTTTTTCCCATGTCTATGAAGAGACTTTTTTAAACAATTTATTATATACAATTTTTGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011149-'10-14,'10-13,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(53.3=100)
A:
PF0005916=Lectin_C=PD(30.8=48.5)
C2:
PF0005916=Lectin_C=PU(36.0=81.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGAGCAAGCTTTTATCACCAGC
R:
AAAAAGTCTCTTCATAGACATGGGA
Band lengths:
284-487
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]