MmuEX6101525 @ mm10
Exon Skipping
Gene
ENSMUSG00000054580 | Pla2r1
Description
phospholipase A2 receptor 1 [Source:MGI Symbol;Acc:MGI:102468]
Coordinates
chr2:60455086-60479567:-
Coord C1 exon
chr2:60479404-60479567
Coord A exon
chr2:60458250-60458452
Coord C2 exon
chr2:60455086-60455231
Length
203 bp
Sequences
Splice sites
3' ss Seq
GGTGTGTTTTCTGCTTTTAGGCA
3' ss Score
8.82
5' ss Seq
AAGGTGATG
5' ss Score
5.22
Exon sequences
Seq C1 exon
ATTTGAACAAGCTTTTATTACCAGTTTGATCAGTAGTGTGGCAGAAAAGGACAGTTATTTTTGGATTGCTCTTCAAGACCAAAACAATACAGGAGAGTACACTTGGAAGACCGTGGGGCAGAGGGAGCCGGTGCAGTACACATACTGGAACACGCGTCAACCCA
Seq A exon
GCAATCGTGGTGGCTGCGTTGTTGTACGAGGAGGAAGTTCACTTGGTCGCTGGGAAGTGAAGGATTGTAGCGACTTTAAGGCAATGTCTCTGTGCAAGACACCAGTCAAAATCTGGGAGAAAACAGAGCTTGAAGAGAGATGGCCGTTTCACCCCTGCTATATGGATTGGGAATCAGCCACTGGTCTGGCCAGTTGCTTCAAG
Seq C2 exon
GTGTTTCATAGCGAAAAGGTCCTGATGAAAAGATCGTGGAGAGAAGCAGAAGCATTCTGTGAGGAGTTTGGGGCTCACCTCGCAAGCTTTGCCCATATAGAGGAAGAAAATTTCGTGAATGAGCTTCTACATTCAAAATTTAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054580-'18-22,'18-20,21-22
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(55.0=100)
A:
PF0005916=Lectin_C=PD(33.0=48.5)
C2:
PF0005916=Lectin_C=PU(36.0=81.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACAAGCTTTTATTACCAGTTTGA
R:
TGAATGTAGAAGCTCATTCACGA
Band lengths:
296-499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types