RnoEX0066619 @ rn6
Exon Skipping
Gene
ENSRNOG00000008129 | Pla2r1
Description
phospholipase A2 receptor 1 [Source:RGD Symbol;Acc:1309777]
Coordinates
chr3:46525736-46545162:-
Coord C1 exon
chr3:46544999-46545162
Coord A exon
chr3:46528792-46528994
Coord C2 exon
chr3:46525736-46525881
Length
203 bp
Sequences
Splice sites
3' ss Seq
GCTTGTTTTTCTGCTTTTAGGCT
3' ss Score
9.41
5' ss Seq
AAGGTGATG
5' ss Score
5.22
Exon sequences
Seq C1 exon
ATTTGAACAAGCTTTTATTACCAGTTTGATCAGTAGTGTGGCAAGAAAGGACAGTTATTTTTGGATTGCTCTTCAAGACCAAAACAATACAGGAGAATACACTTGGAAGACCATGGGACAGAGGGAGCCGGTGCAGTACACACACTGGAACGCACATCAACCCA
Seq A exon
GCTACCATGGTGGCTGTGTTGTCCTGCGAGGAGGGAGTTCATTTGGTCGCTGGGAAGTGAAGAACTGTAGTGACTTTAAGGCAATGTCTCTTTGCAAGACACCCATCAAAGTCTGGGAGAAAACAGAGTTTGAAGGGAGGTGGCCCTTTCACCCCTGCTATATGGACTGGGAATCAGAGACTGGTCTAGCCAGTTGCTTCAAG
Seq C2 exon
GTCTTTCATAGCGAAAAGGTCCTGATGAAAAGATCATGGAGGGAAGCTGAAGCCTTCTGTGAGGAGTTTGGAGCTCACCTCGCAAGTTTTGCCCACATAGAGGAAGAAAACTTCGTGAATAAGCTTCTACACTCAAAATTTAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008129_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(56.7=100)
A:
PF0005916=Lectin_C=PD(34.0=48.5)
C2:
PF0005916=Lectin_C=PU(36.0=81.6)
Main Skipping Isoform:
ENSRNOT00000011003fB10833
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACAAGCTTTTATTACCAGTTTGA
R:
TGAGTGTAGAAGCTTATTCACGA
Band lengths:
296-499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]