BtaEX6009615 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008755 | MARCH7
Description
Bos taurus membrane-associated ring finger (C3HC4) 7 (MARCH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001100317]
Coordinates
chr2:36704830-36729906:-
Coord C1 exon
chr2:36729796-36729906
Coord A exon
chr2:36713472-36713636
Coord C2 exon
chr2:36704830-36705019
Length
165 bp
Sequences
Splice sites
3' ss Seq
TCAAAATCTGCATTTCACAGGAA
3' ss Score
6.6
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
CGCCATTGTGCTTCGTGGTCTGCTGTTCTGCTTCAGGTAGAGGCCTAGAACTCCGAGGAGGAAGGCGGCGGTGTGATCGCTGGGAGCGGGACAAACCCTGTTCAGTGCCAG
Seq A exon
GAAACCTTAAGAATGGAGTCTAAACCTTCAAGGATTCCAAGAAGAATTTCTGTTCAACCTGCTAGCTCTTTAAGTGCTAGGTTGATGTCTGGAAGCAGAGGAAGTGGTTTAAATGATACCTATCACTCAAGGGACTCTTCCTTTCGACTGGATTCGGAATATCAG
Seq C2 exon
TCTGCATCAGCAGCTGCGTCACCATTTCAACCTACATGGTATAGTGAGTCTGAGATAACTCAGGGAGCACGCTCAAGATCACAAAACCAGCAACGGGATCATGATTCAAAAAGACCTAAACTTTCTTGTACAAACTGTACATCTACCTCAACTGGAAGAAGTGTTGGCCATGGTTTAAATGCAGTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008755-'2-2,'2-1,5-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.961 C2=0.906
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCCTAGAACTCCGAGGAG
R:
ACCATGGCCAACACTTCTTCC
Band lengths:
246-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]