GgaEX1035125 @ galGal4
Exon Skipping
Gene
ENSGALG00000012584 | MARCH7
Description
membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:17393]
Coordinates
chr7:36180948-36195254:+
Coord C1 exon
chr7:36180948-36182567
Coord A exon
chr7:36187551-36187707
Coord C2 exon
chr7:36195083-36195254
Length
157 bp
Sequences
Splice sites
3' ss Seq
CAGTGTGTCCTTTATTACAGGGT
3' ss Score
7.72
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
TATTAGGTGTGCACACATCGGGTCTGTACGTTGTTCCTGCGTCAAGGAGGGTGGATGTCTGCTTTTTTTTTTTTTTCCTACAGACTGGCCAGCCTGCCACTATTTCACACTCCTTTATCTGACGTAACAATGCGATGTAGGGCACTCAGCGTGCTGCTGGGACTCAGGAAAGCGCTGCTGCAGACTGACAGCAGATGGGTACGGCAGAGCGAAACGCTGAAGCTCGCGGCTGCGGTGATAGAACCGACGCTCTGCCGCCCCGAGAGCAGCACAGCGCCCTCCGGCGGCTGCGGCAGCGCACCCCCTCCCCCCGTCTCCGCTGCTCTCGCGAGATCTGGGCATGGGCGGGGCGTGGGAAGTGATTGACGGACGCGCGACGCTGCACCGGCGCCATTGTGTTGCTGGGAGAGGCGGCGGGCTCAGCTCGGCCGTCTGCGGGTCCGGACCGGTCTCTCCGGCGGATCTCCAATGCTTGTGTCGTGAGGGCCGCACCCGTGAGA
Seq A exon
GGTACAAAGAATGGAGTCTAAGCCCTCAAGAATTCCTCGAAGGATATCTGTTCAGGCCCCCAGTTCTACTCTAGGATCTAGAACGTTAACTGGAAACAGTTTAGCTGGTGCATATAGTGCAAGAGATTCTTCACGGAGATTAGACTCTGGATACCAG
Seq C2 exon
TCTACATCTTCCTCCTCTCATTTTACATCTGGGTGTTATGATGATTCTGAAAGAACTCAGGGAGCATATTCAAGACTGCATAGCCAGCAGCAAGATAGTGATTCAAAGCGACCTAAGCTGTCTTGTACATCTACCTCTTCTGTGAGAAGTAATGGCTTGACTGCCTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012584_MULTIEX1-1/5=C1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.864 C2=0.569
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGAAGTGATTGACGGACG
R:
ATCTTGCTGCTGGCTATGCAG
Band lengths:
245-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]