MmuEX6101488 @ mm10
Exon Skipping
Gene
ENSMUSG00000026977 | March7
Description
membrane-associated ring finger (C3HC4) 7 [Source:MGI Symbol;Acc:MGI:1931053]
Coordinates
chr2:60209887-60229879:+
Coord C1 exon
chr2:60209887-60210084
Coord A exon
chr2:60228918-60229082
Coord C2 exon
chr2:60229684-60229879
Length
165 bp
Sequences
Splice sites
3' ss Seq
TACAAATTTGCATTTCACAGGAA
3' ss Score
7.06
5' ss Seq
CAGGTAGTA
5' ss Score
5.89
Exon sequences
Seq C1 exon
GGGGGAGGAGGAAGGGCGGGGCTGCCAACGGCGGCGGCCACTTCTGCGGCGCATCCGGAGGGGCGGCCGCCATTGTGCTTCGTCGCCGACTTCTCTGCCGGTAGCCCGAGAGCCGAGCCGAGCCCAGCGAGGAAGGCGGCGGCGGTGTGGCTGCGGCGAGCGCGACACTCCCTGCAGCGGAGTGCTCGGTGGAAGAGG
Seq A exon
GAAACCTTAAGAATGGAGTCTAAACCTTCCAGGATTCCAAGAAGAATTTCTGTTCAACCCTCTGGCTCTTTAAGCACTAGGATGGTGTCTGGAAACAGAGGAACCAGTTTAAATGATTCATATCATTCTAGAGACTCCTCCTTTAGACTGGATTCTGAATATCAG
Seq C2 exon
TCTGCATCAGCATCAGCGTGTGCATCACCATGTCAGCCTGCCTGGTACAGTGAGTCTGAGATACCTCAGGGAGCGCGGGCACGAGCACAGACCCAGCAGCGGGATCATGACTCAAAGAGACCCAAGCTTTCCTGTACAAACTGTGCATCTACCTCAGCTGGGAGGAACGGTGGGAGTGGGTTAAATACAGTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026977-'1-3,'1-2,11-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.922 C2=0.758
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGTGCTTCGTCGCCGA
R:
TTTGAGTCATGATCCCGCTGC
Band lengths:
244-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types