HsaEX0037889 @ hg19
Exon Skipping
Gene
ENSG00000136536 | MARCH7
Description
membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:17393]
Coordinates
chr2:160569000-160599764:+
Coord C1 exon
chr2:160569000-160569117
Coord A exon
chr2:160585520-160585686
Coord C2 exon
chr2:160599572-160599764
Length
167 bp
Sequences
Splice sites
3' ss Seq
TGAAAATTTTTATTTCACAGAAA
3' ss Score
8.21
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
ACTTAACGGTGGTGGCTGGTTCTGCGCCGGATCCGGGAGAGGGGCGGGCGCCATTGTGCTTCGCTGCCGACTGCATTTCCTCAGTCACGGGCCTAGAACTCCAAGGAGAAAGGCGGCG
Seq A exon
AAAAATCTTTAAGAATGGAGTCTAAACCTTCAAGGATTCCAAGAAGAATTTCTGTTCAACCTTCCAGCTCCTTAAGTGCTAGGATGATGTCTGGAAGCAGAGGAAGTAGTTTAAATGATACCTATCACTCAAGAGACTCTTCATTTAGATTGGATTCTGAATATCAG
Seq C2 exon
TCTACATCAGCATCAGCATCTGCGTCACCATTTCAATCTGCATGGTATAGTGAATCTGAGATAACTCAGGGAGCACGCTCAAGATCGCAGAACCAGCAACGGGATCATGATTCAAAAAGACCTAAACTTTCCTGTACAAACTGTACTACCTCAGCTGGGAGAAATGTTGGAAATGGTTTAAACACATTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136536_MULTIEX1-3/6=C1-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.757
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGTGCTTCGCTGCCGA
R:
CCATTTCCAACATTTCTCCCAGC
Band lengths:
243-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)