BtaEX6009783 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006907 | NEB
Description
nebulin [Source:HGNC Symbol;Acc:HGNC:7720]
Coordinates
chr2:44731224-44735351:+
Coord C1 exon
chr2:44731224-44731328
Coord A exon
chr2:44734628-44734732
Coord C2 exon
chr2:44735247-44735351
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTCTTGGAATCTGTTTCCAGAAA
3' ss Score
6.23
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
ATTAAGTATAAGCAATCAGCAGAAATGGAAAAAGCCAATTTCACTTCTGTGGTTGACACTCCGGAGATCATTCATGCCCAGCAAGTCAAGAACCTTTCAAGCCAG
Seq A exon
AAAAAGTACAAGGAAGATGCAGAGAAGTGCATGTCATATTATGAGACCGTTTTGGACACCCCAGAGATGCAGAGGGTCCGGGAGAACCAAAAGAACTTCAGCCTT
Seq C2 exon
CTCCAATACCAGTATGACCTTAAAAACAGTAAAGGAAAAATTACAGTTGTTCAAGACACGCCAGAAATACTGCGTGTAAAAGAAAATCAAAAGAATTTCAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006907-'158-165,'158-164,159-165=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.200 C2=0.057
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(61.5=45.7)
A:
PF0088013=Nebulin=PD(30.8=22.9),PF0088013=Nebulin=PU(55.2=45.7)
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(66.7=45.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCAGAAATGGAAAAAGCCA
R:
CGAGCTGAAATTCTTTTGATTTTCT
Band lengths:
195-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]