GgaEX1002803 @ galGal3
Exon Skipping
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36821283-36822644:-
Coord C1 exon
chr7:36822540-36822644
Coord A exon
chr7:36822017-36822121
Coord C2 exon
chr7:36821283-36821387
Length
105 bp
Sequences
Splice sites
3' ss Seq
CGTTTTGTATTTTGTATCAGAAA
3' ss Score
7.7
5' ss Seq
ACGGTACGT
5' ss Score
11.34
Exon sequences
Seq C1 exon
ATCAAATACAAACAGTTGGCAGAAATGGAGAAGGCCAACTACACCAGTGTTGTCGATACTCCAGAGATCATTCATGCCCAGCAGGTCAAAAACCTTTCAAGCCAG
Seq A exon
AAAAAGTACAAGGAAGAGGCAGAAAAGACCATGCCATACTATGTGCCTGTAGCAGACACACCAGAAATGCAGAGAGTCCGTGAGAATCAAAAGAACTTCAGCACG
Seq C2 exon
CTTCAGTATCAGTGGGACCTACAGAACAGTAAAGGGAAAGTTACAGTTGTACAAGATACACCAGAAATGCTGCGTGTGAAAGAGAACCAGAAGAATTTCAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495-'136-136,'136-135,137-136=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=0.581 C2=0.257
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(66.7=45.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAAATACAAACAGTTGGCAGAA
R:
CGAGCTGAAATTCTTCTGGTTCT
Band lengths:
210-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]