MmuEX6101311 @ mm9
Exon Skipping
Gene
ENSMUSG00000026950 | Neb
Description
nebulin [Source:MGI Symbol;Acc:MGI:97292]
Coordinates
chr2:52016891-52018529:-
Coord C1 exon
chr2:52018425-52018529
Coord A exon
chr2:52017588-52017692
Coord C2 exon
chr2:52016891-52016995
Length
105 bp
Sequences
Splice sites
3' ss Seq
TCCTTGGAACCTTTTCCCAGAAA
3' ss Score
5.17
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ATTAAGTACAAGCAATCGGCAGAAATGGAAAAGGCCAATTTTACTTCTGTTGTTGATACCCCAGAAATTATCCATGCTCAGCAAGTGAAGAACCTTTCCAGCCAG
Seq A exon
AAAAAGTACAAGGAAGATGCAGAGAAGTCCATGTCATATTATGAGACTGTCTTGGACACGCCAGAGATGCAAAGAGTCCGCGAGAACCAGAAGAACTTCAGCCTG
Seq C2 exon
CTTCAATACCAGTGTGACCTTAAAAACAGTAAAGGGAAAATTACAGTTGTTCAAGACACGCCAGAAATACTGCGTGTTAAAGAAAACCAAAAGAATTTCAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026950-'154-154,'154-153,155-154=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.409 A=0.449 C2=0.114
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(66.7=45.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGCAGAAATGGAAAAGGCC
R:
CGAGCTGAAATTCTTTTGGTTTTCT
Band lengths:
195-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: