RnoEX6016860 @ rn6
Exon Skipping
Gene
ENSRNOG00000006783 | Neb
Description
nebulin [Source:RGD Symbol;Acc:1311134]
Coordinates
chr3:37678992-37680761:-
Coord C1 exon
chr3:37680657-37680761
Coord A exon
chr3:37679696-37679800
Coord C2 exon
chr3:37678992-37679096
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTCTTGGAACCTTTCCCCAGAAA
3' ss Score
6.17
5' ss Seq
CTCGTAAGT
5' ss Score
9.63
Exon sequences
Seq C1 exon
ATTAAGTACAAGCAATCGGCAGAAATGGAAAAGGCCAATTTCACTTCTGTTGTTGATACCCCAGAAATTATCCATGCTCAGCAGGTCAAGAACCTCTCTAGCCAG
Seq A exon
AAAAAGTACAAGGAAGATGCAGAGAAGTCCATGTCATATTACGAGACTGTCTTGGATACCCCAGAGATGCAAAGAGTCCGTGAGAACCAGAAGAACTTCAGCCTC
Seq C2 exon
CTTCAATACCAGTGTGACCTTAAAAACAGTAAGGGGAAAATTACAGTGGTCCAAGACACGCCAGAAATACTGCGTGTTAAAGAAAACCAAAAGAATTTCAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006783-'146-159,'146-157,147-159=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.371 A=0.429 C2=0.057
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(66.7=45.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGCAGAAATGGAAAAGGCC
R:
CGAGCTGAAATTCTTTTGGTTTTCT
Band lengths:
195-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]