BtaEX6009784 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006907 | NEB
Description
nebulin [Source:HGNC Symbol;Acc:HGNC:7720]
Coordinates
chr2:44729899-44731328:+
Coord C1 exon
chr2:44729899-44730009
Coord A exon
chr2:44730559-44730672
Coord C2 exon
chr2:44731224-44731328
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTCATGCTCCTATAGAAA
3' ss Score
8.72
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AAAGAGTACAGGAAAGATCTAGAGGAAAGCATCCGTGGGAAGGGTCTCAGCGAAATGGAAGACACACCGGATATGCTAAGAGCAAAGAATGCCACCCAGATCCTCAACGAG
Seq A exon
AAAGAATATAAGAGAGATCTGGAGCTGGAAGTCAAAGGAAGAGGCCTGAATGCCATGGCCAATGAAACTCCTGACTTCCTGAGAGCCAGGAATGCTACAGATATTGCCAGCCAG
Seq C2 exon
ATTAAGTATAAGCAATCAGCAGAAATGGAAAAAGCCAATTTCACTTCTGTGGTTGACACTCCGGAGATCATTCATGCCCAGCAAGTCAAGAACCTTTCAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006907-'156-163,'156-161,157-163=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.757 A=0.237 C2=0.200
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(35.7=27.0),PF0088013=Nebulin=PU(55.2=43.2)
A:
PF0088013=Nebulin=PD(37.9=28.9),PF0088013=Nebulin=PU(55.2=42.1)
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(61.5=45.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTACAGGAAAGATCTAGAGGAAAGC
R:
GGCTTGAAAGGTTCTTGACTTGC
Band lengths:
210-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]