GgaEX0018897 @ galGal3
Exon Skipping
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36822540-36823840:-
Coord C1 exon
chr7:36823730-36823840
Coord A exon
chr7:36822775-36822888
Coord C2 exon
chr7:36822540-36822644
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTTATTGTCTTCATCTGCAGAAA
3' ss Score
10.7
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
AAAGAATACAGGAAGGATCTGGAGGAGGGTGTCAAAGGTAAAGGACTATCTGTTTTGGAGGAGACTCCAGACATGTTAAGAGCAAAGAATGCAACTCAGATCCTGAATGAG
Seq A exon
AAAGAGTACAAAAAAGCCTTGGAATTAGAAATTAAAGGAAAAGGTCTGTCAGAACTGGCTTTGGAAACACCTGATTTTGTGAGAGCAAAGAATGCCACTGACATTGCTAGCCAG
Seq C2 exon
ATCAAATACAAACAGTTGGCAGAAATGGAGAAGGCCAACTACACCAGTGTTGTCGATACTCCAGAGATCATTCATGCCCAGCAGGTCAAAAACCTTTCAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495-'134-134,'134-133,135-134
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.297 A=0.000 C2=0.152
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=29.7),PF0088013=Nebulin=PU(55.2=43.2)
A:
PF0088013=Nebulin=PD(37.9=28.9),PF0088013=Nebulin=PU(55.2=42.1)
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATACAGGAAGGATCTGGAGGA
R:
GGTTTTTGACCTGCTGGGC
Band lengths:
203-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]